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• biojava-tornadovm: opt-in GPU paths for ASA and all-pairs alignment scores (TornadoVM 8.0.0)

  requires action with the application:
  PR Build#221:Pull request#1162openedbymikepapadim
  mikepapadim:feat/tornadovm-gpu

  Oct 28, 2026Action required
  More actions for workflow run 221

• Score all sequence pairs without building alignments (GLOBAL, LOCAL): 27-286x faster getAllPairsScores

  completed successfully:
  PR Build#220:Pull request#1161openedbymikepapadim
  mikepapadim:perf/all-pairs-scores

  Oct 28, 202611m 17s
  More actions for workflow run 220

• Fix reverse complement calculation in CDSSequence.getCodingSequence (#1016)

  completed successfully:
  PR Build#219:Pull request#1160openedbynayanhasnolyf
  nayanhasnolyf:fix/cds-sequence-reverse-complement-1016

  Oct 27, 202610m 29s
  More actions for workflow run 219

• Fix lazy GenBank loading of multiple records

  completed successfully:
  PR Build#218:Pull request#1159openedbyvera-rubin
  vera-rubin:fix/genbank-lazy-offsets

  Oct 17, 202610m 27s
  More actions for workflow run 218

• Bump com.fasterxml.jackson.core:jackson-databind from 2.18.9 to 2.18.10 in /biojava-structure

  completed successfully:
  PR Build#217:Pull request#1157openedbydependabot[bot]Bot
  dependabot/maven/biojava-structure/com.fasterxml.jackson.core-jackson-databind-2.18.10

  Sep 29, 202612m 0s
  More actions for workflow run 217

• More performant interface clustering

  completed successfully:
  PR Build#216:Pull request#1155synchronizebyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 19, 20269m 48s
  More actions for workflow run 216

• More performant interface clustering

  completed successfully:
  PR Build#215:Pull request#1155synchronizebyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 19, 202610m 36s
  More actions for workflow run 215

• More performant interface clustering

  completed successfully:
  PR Build#214:Pull request#1155synchronizebyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 19, 202610m 24s
  More actions for workflow run 214

• More performant interface clustering

  completed successfully:
  PR Build#213:Pull request#1155synchronizebyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 19, 202610m 22s
  More actions for workflow run 213

• Fix: CIF parser wasn't respecting parseCAOnly

  failed:
  PR Build#212:Pull request#1156synchronizebyjosemduarte
  josemduarte:jd/fixcaonly-cif

  Sep 17, 202610m 24s
  More actions for workflow run 212

• Fix: CIF parser wasn't respecting parseCAOnly

  completed successfully:
  PR Build#211:Pull request#1156synchronizebyjosemduarte
  josemduarte:jd/fixcaonly-cif

  Sep 17, 202610m 21s
  More actions for workflow run 211

• Fix: CIF parser wasn't respecting parseCAOnly

  completed successfully:
  PR Build#210:Pull request#1156synchronizebyjosemduarte
  josemduarte:jd/fixcaonly-cif

  Sep 14, 202610m 30s
  More actions for workflow run 210

• More performant interface clustering

  completed successfully:
  PR Build#209:Pull request#1155synchronizebyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 14, 20267m 39s
  More actions for workflow run 209

• Fix: CIF parser wasn't respecting parseCAOnly

  failed:
  PR Build#208:Pull request#1156openedbyjosemduarte
  josemduarte:jd/fixcaonly-cif

  Sep 14, 202610m 22s
  More actions for workflow run 208

• More performant interface clustering

  completed successfully:
  PR Build#207:Pull request#1155openedbyjosemduarte
  josemduarte:jd/interf-clustering

  Sep 14, 202610m 40s
  More actions for workflow run 207

• Do not pin the status an absent file returns

  completed successfully:
  PR Build#206:Pull request#1154openedbyaalhossary
  aalhossary:aa/absent-file-status

  Sep 6, 20266m 34s
  More actions for workflow run 206

• Contact calculation performance tweaks

  failed:
  PR Build#205:Pull request#1147synchronizebyjosemduarte
  jd/contact-perf

  Sep 3, 20262m 22s
  More actions for workflow run 205

• Fetch, cache and display electron density and cryo-EM maps

  completed successfully:
  PR Build#204:Pull request#1134synchronizebyaalhossary
  aalhossary:aa/electron-density-maps

  Aug 30, 20267m 58s
  More actions for workflow run 204

• Bump the development version to 7.3.0-SNAPSHOT

  completed successfully:
  PR Build#203:Pull request#1142synchronizebyaalhossary
  aalhossary:aa/bump-7.3.0-snapshot

  Aug 30, 20269m 45s
  More actions for workflow run 203

• Fetch, cache and display electron density and cryo-EM maps

  completed successfully:
  PR Build#202:Pull request#1134synchronizebyaalhossary
  aalhossary:aa/electron-density-maps

  Aug 30, 202610m 15s
  More actions for workflow run 202

• Follow the redirects HttpURLConnection declines (307/308, cross-protocol)

  completed successfully:
  PR Build#201:Pull request#1151openedbyaalhossary
  aalhossary:aa/follow-redirects

  Aug 30, 202610m 36s
  More actions for workflow run 201

• Keep the ECOD read lock balanced when loading fails

  completed successfully:
  PR Build#200:Pull request#1150openedbyaalhossary
  aalhossary:aa/ecod-lock-on-failure

  Aug 30, 202610m 35s
  More actions for workflow run 200

• Fetch, cache and display electron density and cryo-EM maps

  completed successfully:
  PR Build#199:Pull request#1134synchronizebyaalhossary
  aalhossary:aa/electron-density-maps

  Aug 29, 202611m 31s
  More actions for workflow run 199

• ASA calculation performance tweaks

  completed successfully:
  PR Build#198:Pull request#1148openedbyjosemduarte
  josemduarte:jd/asa-perf

  Aug 28, 20269m 59s
  More actions for workflow run 198

• Contact calculation performance tweaks

  completed successfully:
  PR Build#197:Pull request#1147openedbyjosemduarte
  jd/contact-perf

  Aug 28, 20267m 27s
  More actions for workflow run 197