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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.9k 674

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 254 216

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 196 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    64 14

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 56 61

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 12

Repositories

Showing 10 of 75 repositories
  • snakemake-report-plugin-nanopub Public

    Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-nanopub's past year of commit activity
    Python 1 MIT 0 0 1 Updated Oct 30, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake's past year of commit activity
    Python 2,893 MIT 674 998 (1 issue needs help) 137 Updated Oct 30, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers's past year of commit activity
    Python 254 216 4 54 Updated Oct 30, 2026
  • snakemake-report-plugin-rocrate Public

    Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-rocrate's past year of commit activity
    Python 2 MIT 3 2 3 Updated Oct 29, 2026
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy's past year of commit activity
    Python 28 MPL-2.0 14 14 5 Updated Oct 28, 2026
  • snakemake-hackathon Public

    Paper drafts of the yearly Snakemake Hackathon

    snakemake/snakemake-hackathon's past year of commit activity
    0 0 0 0 Updated Oct 27, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog's past year of commit activity
    Python 37 MIT 12 2 (1 issue needs help) 0 Updated Oct 26, 2026
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt's past year of commit activity
    Python 196 MIT 32 2 11 Updated Oct 26, 2026
  • snakemake-software-deployment-plugin-container Public

    Run snakemake within a rootless container

    snakemake/snakemake-software-deployment-plugin-container's past year of commit activity
    Python 2 MIT 1 1 2 Updated Oct 23, 2026
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common's past year of commit activity
    Python 0 MIT 7 8 6 Updated Oct 23, 2026
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