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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 15 1

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 117 3

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 43 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 74 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 64 16

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 313 66

Repositories

Showing 10 of 96 repositories
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

    BirolLab/ntSynt-viz's past year of commit activity
    HTML 67 GPL-3.0 6 0 0 Updated Oct 30, 2026
  • aakomp_paper Public

    figure and data used to generate manuscript figures

    BirolLab/aakomp_paper's past year of commit activity
    R 0 0 0 0 Updated Oct 30, 2026
  • LLM-Clinical-Trial-Annotator Public

    An LLM-based peptide clinical trial annotation tool/workflow.

    BirolLab/LLM-Clinical-Trial-Annotator's past year of commit activity
    Python 0 0 0 0 Updated Oct 29, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl's past year of commit activity
    HTML 2 3 4 0 Updated Oct 29, 2026
  • korus Public

    Probabilistic ancestry inference beyond variant calls

    BirolLab/korus's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Oct 29, 2026
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot's past year of commit activity
    Python 15 GPL-3.0 1 1 0 Updated Oct 29, 2026
  • goldrush Public

    Linear-time de novo Long Read Assembler

    BirolLab/goldrush's past year of commit activity
    C++ 43 GPL-3.0 2 4 2 Updated Oct 28, 2026
  • goldpolish Public

    GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

    BirolLab/goldpolish's past year of commit activity
    C++ 8 GPL-3.0 0 2 (1 issue needs help) 1 Updated Oct 28, 2026
  • btllib Public

    📚Bioinformatics Technology Lab common code library

    BirolLab/btllib's past year of commit activity
    C++ 29 8 27 (1 issue needs help) 10 Updated Oct 28, 2026
  • ntStat Public

    ntStat: a toolkit for statistical analysis of k-mer frequency and depth

    BirolLab/ntStat's past year of commit activity
    C++ 8 GPL-3.0 0 1 0 Updated Oct 14, 2026
View all repositories

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